| Abstract Detail
Large Scale Technologies and Resources Jaiswal, Pankaj [1], Avraham, Shuly [2], Buckler, Edward [3], Casstevens, Terry [3], Hebbard, Claire [4], Liang, Chengzhi [2], Ni, Junjian [4], Ravenscroft, Dean [4], Ren, Liya [2], Stein, Lincoln [2], Spooner, William [2], Tecle, Isaak [4], Thomason, Jim [2], Xuehong, Wei [2], Ware, Doreen [2], Youens-Clark, Ken [2], Yap, Immanuel [4], McCouch, Susan [4]. Gramene: A Resource for Comparative Plant Genomics. Gramene (http://www.gramene.org) is a curated, open-source, web-accessible data resource for comparative genome analysis in the plants. The goal of Gramene is to help molecular biologists, biochemists, geneticists, plant breeder and researchers using genomics tools to identify and understand the relationships among genes, pathways and phenotypes in a wide range of grass species. Building upon the completely sequenced genomes of rice and Arabidopsis and maize that is currently being sequenced, Gramene presents information on Genomes, sequence related features, genes, proteins, QTL, genetic maps, genetic markers, germplasm, genetic diversity and metabolic pathways. Information is organized by modules, where the relationships between data sets are generated in a semi-automated and manually curated using controlled vocabularies (ontologies) and literature citations. Using Gramene helps a researcher to easily find orthologs between rice, Arabidopsis, compare sequenced genomes and their colinearity, compare genetic maps and their colinearity to sequenced genomes, find genes, their functions, phenotypes, roles in the pathways and associations to genetic diversity using SNPs, other polymorphic markers and QTLs. The presentation will higlight the organization of information and tools developed to help drive your research of interest. The Gramene project is supported by National Science Foundation grant No. 0321685 and USDA ARS. Log in to add this item to your schedule
Related Links: Gramene database Genomes Markers Pathways (RiceCyc) Proteins Genes Genetic Diversity Database The Genomic Diversity and Phenotype Data Model GrameneMart Comparative Maps Gramene FAQs Outreach and Education Our publications
1 - Cornell University, Plant Breeding and Genetics, Ithaca, NY, 14853, USA 2 - Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA 3 - Institute for Genomic Diversity, Cornell University, Ithaca, NY-14853 4 - Cornell University, Plant Breeding and Genetics, Ithaca, NY, 14853, US
Keywords: Genome-wide synteny Genetic Resource Genetic markers Genetic diversity Genetic variation genomics metabolic pathway genetic maps rice Arabidopsis maize Comparative Genomics comparative functional genomics.
Presentation Type: Plant Biology Abstract Session: P Location: Exhibit Hall (Northeast, Southwest & Southeast)/Hilton Date: Sunday, July 8th, 2007 Time: 8:00 AM Number: P42013 Abstract ID:2190 |