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For Mechanisms of Gene Regulation

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IDTitleSection/TopicAuthorsKeywords
21243’UTR mediated transcript turnover may be a general regulatory step in the expression of some isoforms of cytoplasmic glutamine synthetase in legumes.
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Mechanisms of Gene RegulationVasudevan Simon, Bindu; Ortega, Jose Luis; Bagga, Suman; Sengupta-Gopalan, Champa.Glutamine synthetase
449Analysis of the expression of key polyamine biosynthetic genes in Arabidopsis
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Mechanisms of Gene RegulationMajumdar, Rajtilak; Mitchell, Jeff; Sanders, Scott; Minocha, Subhash.polyamine
2327An Arabidopsis MYB is required for the coordination of developmental events during trichome morphogenesis
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Mechanisms of Gene RegulationGilding, Edward; Marks, M. David.transcriptional regulation
gene regulation
cell growth regulation
MYB
trichome
1578A novel WRKY-factor is involved in induction of PR-1a gene expression by tobacco mosaic virus infection
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Mechanisms of Gene Regulationvan Verk, M.C.; Maltese, F.; Neeleman, L.; Pappaioannou, D.; Bol, J.F.; Linthorst, H.J.M..transcription factor
WRKY
gene expression
tobacco
defence- and repair-related proteins
873A proteomic study of Arabidopsis cleavage and polyadenylation specificity factor
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Mechanisms of Gene Regulationzhao, hongwei; Li, Quinn.RNA processing
polyadenylation
tandem affinity purification
mass spectrometry
cleavage and polyadenylation specificity factor
1153A Transcriptional Repression Motif in the MADS-factor AGL15 is Involved in Recruitment of Histone Deactylase Complex Components
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Mechanisms of Gene RegulationHill, Kristine; Wang, Huai; Perry, Sharyn E.transcriptional repression
1778Biochemical and Molecular Analysis of LePS2;1- a Phosphate Starvation Induced Protein Phosphatase Gene from Tomato
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Mechanisms of Gene RegulationBaldwin, James C.; Karthikeyan, Athikkattuvalasu S.; Cao, Aiqin; Raghothama, Kashchandra G.phosphate starvation
Protein phosphatase
LePS2
2355Characterization of 5'-3' Exoribonucleases in the green alga Chlamydomonas reinhardtii
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Mechanisms of Gene RegulationFischer, Michael J.; Upchurch, Kyle M.; Higgs, David C..Transcript stability
Organelle
RNA splicing
2032Characterization of promoter regions of six cellulose synthase genes in Eucalyptus grandis
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Mechanisms of Gene RegulationCreux, N. M.; Ranik, M.; Berger, D. K.; Myburg, A. A..promoter
cellulose synthase
cis-element
heterologous gene expression
promotor evolution
1847Comparison of Viral Suppressors of Silencing to Stabilize Transgene Expression
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Mechanisms of Gene RegulationDhillon, Taniya; Chiera, Joseph; Finer, John.GFP
Particle bombardment
Viral suppressors of silencing
2318Defining the role of translation initiation factor eIF3h in Arabidopsis
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Mechanisms of Gene RegulationZhou, Fujun; Roy, Bijoyita; von Arnim, Albrecht.translation initiation
eIF3h
Arabidopsis
Translational Regulation
1605Depletion of NbBPS1 causes uncontrolled cell proliferation in the vascular cambium and cell death in Nicotiana benthamiana
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Mechanisms of Gene RegulationKang, Yongwon; Kim, Ryong Nam; Cho, Hye Sun; Choi, Doil; Pai, Hyun-sook.cell division
cell death
1457Excision of the piggyBac transposable element in maize cells is a precise event
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Mechanisms of Gene RegulationJohnson, Eric T.; Dowd, Patrick F..piggyBac
Transposons
maize
351Experimental comparison of pre-mRNA splicing between flowering plant lineages
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Mechanisms of Gene RegulationWright, Janet D; Schoenbeck, Mark.gene regulation
intron splicing
intron identification
552Exploring the mechanisms by which the Autonomous Pathway functions in development
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Mechanisms of Gene RegulationVeley, Kira; Michaels, Scott D..flowering time
gene regulation
fpa
genetics
2323Expression of Arabidopsis Drg genes. Promoter::GUS fusions, quantitative RT-PCR and patterns of protein accumulation
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Mechanisms of Gene RegulationStafstrom, Joel.GTP binding protein
2222Expression of genes enconding for xyloglucan and sucrose metabolism in seedlings of the tropical legume tree Hymenaea courbaril is controlled by light, auxin and sugars.
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Mechanisms of Gene RegulationBrandão, Aline; Vincentz, Michel; Buckeridge, Marcos.gene expression
sucrose metabolism
xyloglucan
Hymaneae courbaril
1653Functional Analysis of Grapevine Transcription Factors VaERF4 and VaERF5
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Mechanisms of Gene RegulationChen, Q.; Fung, R. W. M.; Qiu, Wenping.Grapevine
ethylene response factor
1125Functional analysis of the acidic domain of RF2a, a rice b-ZIP protein
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Mechanisms of Gene RegulationOrdiz, M. Isabel; Barbazuk, Brad; Beachy, Roger N..gene regulation
activation domains
bZIP transcription factors
chimeric proteins
526Functional analysis of the Eukaryotic Elongation Factor One Alpha gene family
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Mechanisms of Gene RegulationTefft, Nicholas; Miles, Timothy; Ransom-Hodgkins, Wendy.eEF1A
T-DNA
qRT-PCR
395GA and Sugar Signaling Interference in Germinating Cereal Grains: Mechanism of MYBGA and MYBS1 Interaction in the Regulation of α-Amylase Gene Expression
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Mechanisms of Gene RegulationYu, Su-May; Hong, Ya-Fang.Hormone signaling
rice
sugar signaling
alpha-amylase
seed germination
129IbMYB1, a regulator of anthocyanin biosynthesis in tuberous root of purple-fleshed sweet potato
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Mechanisms of Gene RegulationMano, Hironori; Sato, Kazuhito; Higo, Hiromi; Minobe, Yuzo.transcription factor
MYB
anthocyanin
sweet potato
1910Identification of abiotic stress specific molecular switches for stress tolerance and enhanced seed composition in soybean through high throughput quantitative real time PCR
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Mechanisms of Gene RegulationValliyodan, Babu; Libault, Marc; Joshi, Trupti; Xu, Dong; Stacey, Gary; Nguyen, Henry.gene regulation
transcription factor
abiotic stress
Drought
Soybean
seed development
2017Identification of genes encoding signaling components of MRR
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Mechanisms of Gene RegulationFoster, Carol M.; Zarkovic, Jelena; Umbach, Ann L.; Bollinger, Jeaninne M.; Ulker, Bekir; Somssich, Imre; Dale, Sachie; Rhoads, David M..mitochondria
retrograde regulation
WRKY
AOX1a
TCA cycle
respiration
872Identification of QTL which will regulate the proportions of saturated and unsaturated fatty acids in seed oils of Arabidopsis thaliana.
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Mechanisms of Gene RegulationSanyal, Anushree.QTL
1874Isolation and characterization of a gene involved in soybean nodulation
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Mechanisms of Gene RegulationEckert, Helene; Clemente, Thomas E; Stacey, Gary; Shoemaker, Randy C.; Wang, Kan.nodulation
Glycin max
NSP2
nitrogen fixation
Bradyrhizobium japonicum
1031Isolation and characterization of exon junction complex (EJC) in plants and study the function of two EJC core proteins Mago and Y14
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Mechanisms of Gene RegulationAzhakanandam, Kasi; Qu, Rongda.EJC
Mago
Y14
783Isolation of Novel Chinese Cabbage (Brassica rapa L.) MAP Kinase Gene, BrMAPK3 Which Accumulates Rapidly in Response to Environmental Stresses in Transgenic Arabidopsis thaliana
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Mechanisms of Gene RegulationKang, Kwon-Kyoo; Jung, Yujin; Arvin, Tulga; Dane, Fenny; Nou, Ill-Sup.kinase
abiotic and biotic stresses
B. rapa
512KFR1, A novel Kelch-domain, F-box protein regulates ubiquitination-dependent transcript stability
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Mechanisms of Gene RegulationMadzima, Thelma; Kaufman, Lon; Folta, Kevin M..Transcript stability
blue light
F-Box protein
ubiquitination
838Molecular mechanism of the transcriptional repression mediated by a plant specific transcriptional repression domain, EAR-motif, in Arabidopsis
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Mechanisms of Gene RegulationUmemura, Yoshimi; Hiratsu, Keiichiro; Ohme-Takagi, Masaru.transcriptional repression
EAR-motif
CRES-T
Yeast-two hybrid
119Nonredundant functions of Aux/IAA proteins
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Mechanisms of Gene RegulationTiwari, Shiv; Hagen, Gretchen; Guilfoyle, Tom.
1469Phenotypic Consequences of mRNA decapping defects in Arabidopsis are suppressed by URSULA
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Mechanisms of Gene RegulationFauver, N. A.; Goeres, D. C.; Zhang, W.; Sieburth, Leslie E..seedling development
Leaf development
RNA decay
mRNA decapping
TRIDENT
Arabidopsis
1270Posttranscriptional regulation of ERECTA receptor-like kinase expression
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Mechanisms of Gene RegulationWillet, Spencer; Wilson, Rebecca; Torii, Keiko; Shpak, Elena.receptor kinase
cell division
splicing
protein synthesis and turnover
2256Protein Interaction at LTP Module in Arabidopsis thaliana During Bolting Transition
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Mechanisms of Gene RegulationBen-Ghaly, Labeed; Gamboa, Jeanne Dyan; Hsiung, Jamie; Reyes-Izquierdo, Tania; Vellanoweth, PhD, Robert L..lipid transfer protein
cis-regulatory element
lipid signaling
promoter
LTP
Luciferase
1571Regulating the expression of chloroplast translocon and ribosomal protein genes in Arabidopsis
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Mechanisms of Gene RegulationHuang, Yen-Chiao; Sun, Chih-Wen.
956
Canceled
Relation between Development and Splicing :Functional analysis of Arabidopsis thaliana PRP18 family, SLU7-2 family and PRP16 proteins potentially involved in second step of splicing
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Mechanisms of Gene RegulationAnnamalai, Devi.
2684Relation between Development and Splicing :Functional analysis of Arabidopsis thaliana PRP18 family, SLU7-2 family and PRP16 proteins potentially involved in second step of splicing 1Devi Annamalai1 and 2
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Mechanisms of Gene RegulationAnnamalai, Devi; Schuler, Mary A..PRP18 family
second step splcing factors in arabidopsis
PRP16
SLU7 family
880Repression of anthocyan synthesis in Arabidopsis by three related, nitrate-induced transcription factors acting upstream of PAP1
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Mechanisms of Gene RegulationRubin, Grit; Dieterich, Jens-Holger; Stitt, Mark; Scheible, Wolf-Rüdiger.transcription factors
anthocyan synthesis
nitrate
PAP
179Riboswitch mediated gene control in plants
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Mechanisms of Gene RegulationWachter, Andreas; Tunc-Ozdemir, Meral; Grove, Beth C.; Green, Pamela J.; Shintani, David K.; Breaker, Ronald R..riboswitch
aptamer
thiamine
3´ terminus processing
1364RIN and NOR Function in Acquisition of Fruit Ripening Competency
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Mechanisms of Gene RegulationMartel, Catherine; Giovannoni, James J..Fruit
gene regulation
tomato
ripening
transcription factor
microarray
1443RNA decay: are mRNAs specifically targeted to 5’ vs. 3’ decay pathways?
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Mechanisms of Gene RegulationGoeres, David C.; Sieburth, Leslie E..RNA decay
mRNA decapping
trident
varicose
Arabidopsis
583Roles of the first introns on the expression of Arabidopsis (Arabidopsis thaliana) genes for actin and actin-binding proteins
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Mechanisms of Gene RegulationJung, Eun-Jung; Jeong, Young-Min; Kim, Hoyeun; Lee, So-Young; Kim, Sang-Gu.actin
actin depolymerizing factor
profilin
intron mediated enhancement
GUS
intron
gene expression
282Salicylic acid is required for safener-induced expression of glutathione S-transferases in Arabidopsis
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Mechanisms of Gene RegulationEl Sherif, Nahla; Goldsbrough, Peter.GST
safeners
salicylic acid
phenyl alanine
glutathione S-transferases
555STAYGREEN Regulates Chlorophyll Degradation by Interacting with Light-harvesting Chlorophyll-binding Protein during Leaf Senescence
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Mechanisms of Gene RegulationPark, So-Yon; Paek, Nam-Chon.leaf senescence 
Stay-green
protein degradation
2195The 5’UTR of a soybean GS1 gene (Gmglnβ1) plays a role in the regulation of its expression
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Mechanisms of Gene RegulationWilson, Olivia; Ortega, Jose Luis; Sengupta-Gopalan, Champa.Agro-infiltration
Glutamine synthetase
3'UTR
2156The Arabidopsis SR protein splicing factor SR45 is required for normal development and environmental response
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Mechanisms of Gene RegulationZhang, Xiao-Ning; Edmonds, Jason; Mount, Steve.alternative splicing
SR proteins
Arabidopsis
1881The effect of protein phosphatase inhibitor cantharidin on A. thaliana transcriptom
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Mechanisms of Gene RegulationBajsa, Joanna; Agarwal, Ameeta; Duke, Stephen O..protein phosphatase inhibitor
microarray
Arabidopsis thaliana
1106The histone deacetylase OsHDAC1 negatively regulates OsNAC4 that controls root development
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Mechanisms of Gene RegulationChung, Pil-Joong; Kwon, Chang-Woo; Jeong, Min-Ho; Jeong, Jin Seo; Kim, Yeon-Ki; Nahm, Baek Hie; Kim, Ju-Kon.Histone deacetylase
HDAC inhibitor
OsNAC4
chromatin immunoprecipitation
263The H subunit of eukaryotic translation initiation factor 3 contributes to the efficient translation of mRNAs with upstream open reading frames
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Mechanisms of Gene RegulationKim, Byung-Hoon; Roy, Bijoyita; Cai, Xue; Vaughn, Justin; Zhou, Fujun; Kim, Tae-Houn; von Arnim, Albrecht.uAUG
uORF
5' UTR
eIF3h
translation
polysome
microarray
2310The Role of Promoter Sequence Divergence in Nonadditive Gene Expression in Arabidopsis Allopolyploids
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Mechanisms of Gene RegulationAgarwal, Vikram; Ha, Misook; Chen, Z. Jeffrey.polyploidy
Arabidopsis
1608The WD40-repeat protein RAE1 is involved in mRNA export and cell proliferation control in higher plants
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Mechanisms of Gene RegulationLee, Jae-Yong; Pai, Hyun-sook.cell division
602Three Arabidopsis PUF proteins may be involved in translational regulation of transcripts related to shoot apical meristem maintenance
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Mechanisms of Gene RegulationFrancischini, C.W.; Favaro, Elaine C.; Quaggio, Ronaldo B..Arabidopsis thaliana
PUF proteins
Translational Regulation
yeast three-hybrid system
739Transgenic CBF1 tomato plants manifest enhanced tolerance to Ralstonia solanacearum via activation of LeERFs and pathogenesis-related (PR) genes
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Mechanisms of Gene RegulationLi, Chia-Wen; You, Su-Juan; Sanjaya, Sanjaya; Chan, Ming-Tsair.CBF1
Ralstonia solanacearum
ethylene response factor
Pathogenesis-related proteins
408Translational regulation of the plant S-adenosylmethionine decarboxylase by a sequence-dependent upstream open reading frame by phosphorylation
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Mechanisms of Gene RegulationChoi, Yu Jin; Park, Ky Young.S-adenosylmethionine decarboxylase
Upstream open reading frame
gene regulation
Phosphorylation
2188Understanding the function and regulatory mechanism of sucrose phosphate synthase in alfalfa nodules
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Mechanisms of Gene RegulationMartinez, Martha; Ortega, Jose Luis; Aleman, Lorenzo; Sengupta-Gopalan, Champa.SPS
alfalfa
nodules
400Unique functional specialization of individual subunits of the RNA-processing exosome complex in Arabidopsis
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Mechanisms of Gene RegulationChekanova, Julia; Gregory, Brian D.; Hooker, Tanya S.; Kumar, Ravi; Chen, Huaming; Yazaki, Junshi; Alonso, Jose M.; Brukhin, Vladimir; Grossniklaus, Ueli; Ecker, Joseph R.; Belostotsky, Dmitry.exosome
RNA processing
RNA degradation
RNA quality control
posttranscriptional control

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